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  5. PTI_07G02450.1

PTI_07G02450.1


Description : Replication factor C, C-terminal; ATPase, AAA-type, core [Interproscan].


Gene families : OG_01_0002295 (OrthoFinder) Phylogenetic Tree(s): OG0002295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G02450.1
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001085.3 tig00001085_g6944.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder
Cre12.g527300 30793001, RFC5 Cell cycle.interphase.DNA... 0.03 OrthoFinder
Cz05g24170.t1 No alias ATPase, AAA-type, core; Replication factor C, C-terminal... 0.01 OrthoFinder
EOD08878 No alias Putative replication factor C subunit 5 [Ensembl]. 0.02 OrthoFinder
Sro793_g203250.1 Contig534.g6933 Factor C small subunit 0.04 OrthoFinder
TP13G00440.1 No alias ATPase, AAA-type, core; Replication factor C, C-terminal... 0.02 OrthoFinder
Vocar.0037s0052.1 32897481 ATPase, AAA-type, core; Replication factor C, C-terminal... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Enrichment
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006481 C-terminal protein methylation IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018410 C-terminal protein amino acid modification IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043687 post-translational protein modification IEP Enrichment
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 53 173
IPR013748 Rep_factorC_C 240 325
No external refs found!