1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_07G01910.1

PTI_07G01910.1


Description : Rad50/SbcC-type AAA domain [Interproscan].


Gene families : OG_01_0001777 (OrthoFinder) Phylogenetic Tree(s): OG0001777_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G01910.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cz01g32240.t1 No alias Rad50/SbcC-type AAA domain [Interproscan]. 0.02 OrthoFinder
EOD12487 No alias Rad50/SbcC-type AAA domain [Interproscan]. 0.02 OrthoFinder
XM_002507690.1 MICPUN_106725, 106725 Rad50 DNA repair/recombination protein (Rad50) 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006474 N-terminal protein amino acid acetylation IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007088 regulation of mitotic nuclear division IEP Enrichment
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Enrichment
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0018206 peptidyl-methionine modification IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Enrichment
CC GO:0031417 NatC complex IEP Enrichment
BP GO:0031577 spindle checkpoint signaling IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0033046 negative regulation of sister chromatid segregation IEP Enrichment
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Enrichment
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0045839 negative regulation of mitotic nuclear division IEP Enrichment
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Enrichment
BP GO:0045930 negative regulation of mitotic cell cycle IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051783 regulation of nuclear division IEP Enrichment
BP GO:0051784 negative regulation of nuclear division IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
BP GO:0051985 negative regulation of chromosome segregation IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0071173 spindle assembly checkpoint signaling IEP Enrichment
BP GO:0071174 mitotic spindle checkpoint signaling IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
BP GO:1905819 negative regulation of chromosome separation IEP Enrichment
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR038729 Rad50/SbcC_AAA 73 266
No external refs found!