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  5. PTI_07G00350.1

PTI_07G00350.1


Description : Ribosomal protein S11 [Interproscan].


Gene families : OG_01_0004154 (OrthoFinder) Phylogenetic Tree(s): OG0004154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_07G00350.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.44 tig00001154_g7308.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.36 OrthoFinder
Cre11.g480150 30775525, RPS14 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cz12g21160.t1 No alias Ribosomal protein S11 [Interproscan]. 0.24 OrthoFinder
Dusal.0610s00002.1 33191023 Ribosomal protein S11 [Interproscan]. 0.09 OrthoFinder
EOD40171 No alias 40S ribosomal protein S14 [Ensembl]. 0.06 OrthoFinder
OT_02G02980.1 No alias Ribosomal protein S11 [Interproscan]. 0.12 OrthoFinder
Sro1286_g259390.1 Contig2537.g20698 40S ribosomal protein S14 0.44 OrthoFinder
Vocar.0048s0023.1 32893648 Ribosomal protein S11 [Interproscan]. 0.08 OrthoFinder
XM_002507445.1 MICPUN_113929, 113929 Ribosomal protein S14 (RPS14) 0.31 OrthoFinder
XM_003056111.1 MicpuC2_70746, 70746 Ribosomal protein S14 (RPS14) 0.04 OrthoFinder
lcl|BLLF01000375.1_cds_GFH11112.1_5589 HaLaN_06553, GFH11112 Ribosomal protein 0.08 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45484.1_1348 PRW45484 40S ribosomal S14-2 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496975.1_704 KAA8496975 40S ribosomal protein S14 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001971 Ribosomal_S11 23 141
No external refs found!