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  5. PTI_06G01310.1

PTI_06G01310.1


Description : Ribosomal protein L29/L35 [Interproscan].


Gene families : OG_01_0003855 (OrthoFinder) Phylogenetic Tree(s): OG0003855_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_06G01310.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.79 tig00000241_g20941.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder
Cre14.g617900 30776584, RPL35 Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder
Cz12g12300.t1 No alias Ribosomal protein L29/L35 [Interproscan]. 0.3 OrthoFinder
Dusal.0936s00001.1 33189602 Ribosomal protein L29/L35 [Interproscan]. 0.1 OrthoFinder
EOD14796 No alias Ribosomal protein L29/L35 [Interproscan]. 0.17 OrthoFinder
OT_05G01490.1 No alias Ribosomal protein L29/L35 [Interproscan]. 0.24 OrthoFinder
Sro1394_g268940.1 Contig598.g7460 60S ribosomal protein L35 0.58 OrthoFinder
SymbC1.scaffold356.4 356.4 Ribosomal protein L29/L35 [Interproscan]. 0.06 OrthoFinder
TP12G02050.1 No alias Ribosomal protein L29/L35 [Interproscan]. 0.43 OrthoFinder
Vocar.0001s1458.1 32885943 Ribosomal protein L29/L35 [Interproscan]. 0.08 OrthoFinder
XM_002507650.1 MICPUN_107597, 107597 Ribosomal protein L29/L35 [Interproscan]. 0.29 OrthoFinder
XM_003056132.1 MicpuC2_49485, 49485 60S ribosomal protein L35 (RPL35) 0.14 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20803.1_5002 PRW20803 60S ribosomal L35-like 0.17 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492667.1_9360 KAA8492667 60S ribosomal protein L35 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 6 61
No external refs found!