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  5. PTI_05G02190.1

PTI_05G02190.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_05G02190.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
EOD31364 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD36218 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD37462 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.02 OrthoFinder
SymbC1.scaffold3449.2 3449.2 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0729.1 32886056 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1410.1 32885138 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0007s0376.1 32887918 Cleavage stimulation factor subunit 2, hinge domain; RNA... 0.01 OrthoFinder
XM_002506682.1 MICPUN_64827, 64827 Cleavage stimulation factor subunit 2, hinge domain;... 0.01 OrthoFinder
XM_003057264.1 MicpuC2_62347, 62347 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59679.1_6108 PRW59679 Cleavage stimulating factor 64-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 85
No external refs found!