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  5. PTI_05G02170.1

PTI_05G02170.1


Description : Ribosomal protein L38e [Interproscan].


Gene families : OG_01_0004462 (OrthoFinder) Phylogenetic Tree(s): OG0004462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_05G02170.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021719.6 tig00021719_g23151.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 OrthoFinder
Cre07.g325746 30775115, RPL38 Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder
Cz01g08210.t1 No alias Ribosomal protein L38e [Interproscan]. 0.22 OrthoFinder
Dusal.0190s00012.1 33189449 Ribosomal protein L38e [Interproscan]. 0.07 OrthoFinder
OT_11G02560.1 No alias Ribosomal protein L38e [Interproscan]. 0.1 OrthoFinder
TP02G00250.1 No alias Ribosomal protein L38e [Interproscan]. 0.16 OrthoFinder
Transcript_contig_61849 61849 Ribosomal protein L38e [Interproscan]. 0.03 OrthoFinder
Vocar.0003s0165.1 32889359 Ribosomal protein L38e [Interproscan]. 0.06 OrthoFinder
XM_002508915.1 MICPUN_63254, 63254 Ribosomal protein L38e [Interproscan]. 0.18 OrthoFinder
XM_003061755.1 MicpuC2_51368, 51368 Ribosomal protein L38e [Interproscan]. 0.12 OrthoFinder
lcl|BLLF01000190.1_cds_GFH08863.1_3340 HaLaN_03898, GFH08863 Ribosomal protein L38e [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59048.1_7123 PRW59048 60S ribosomal L38 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497647.1_6600 KAA8497647 60S ribosomal protein L38 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 31 98
No external refs found!