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  5. PTI_04G05000.1

PTI_04G05000.1


Description : THO complex subunit 2, N-terminal domain; THO complex, subunitTHOC2, N-terminal; THO complex, subunitTHOC2, C-terminal [Interproscan].


Gene families : OG_01_0002802 (OrthoFinder) Phylogenetic Tree(s): OG0002802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G05000.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001428.15 tig00001428_g8735.t1 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder
Cpa|evm.model.tig00001636.2 tig00001636_g9525.t1 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder
Cz09g28220.t1 No alias THO complex, subunitTHOC2, C-terminal; THO complex... 0.03 OrthoFinder
Dusal.0033s00006.1 33202506 THO complex, subunitTHOC2, C-terminal; THO complex... 0.02 OrthoFinder
EOD20992 No alias THO complex, subunitTHOC2, N-terminal; THO complex,... 0.04 OrthoFinder
Sro19_g013450.1 Contig446.g6009 THO complex subunit 2 0.07 OrthoFinder
TP06G06680.1 No alias THO complex, subunitTHOC2, C-terminal; THO complex... 0.03 OrthoFinder
XM_002504522.1 MICPUN_107427, 107427 Hypothetical protein (THO2) 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497409.1_1138 KAA8497409 THO complex subunit 2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR021726 THO_THOC2_N 590 670
IPR032302 THOC2_N 58 211
IPR032302 THOC2_N 466 588
IPR021418 THO_THOC2_C 904 1209
No external refs found!