1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_04G04830.1

PTI_04G04830.1


Description : Ribosomal protein L24e-related [Interproscan].


Gene families : OG_01_0002766 (OrthoFinder) Phylogenetic Tree(s): OG0002766_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G04830.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001093.9 tig00001093_g6884.t1 No description available 0.22 OrthoFinder
Cre09.g391097 30781301, RPL24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.44 OrthoFinder
Cz02g32210.t1 No alias Ribosomal protein L24e-related [Interproscan]. 0.34 OrthoFinder
Dusal.0883s00005.1 33201955 Ribosomal protein L24e-related [Interproscan]. 0.19 OrthoFinder
EOD04136 No alias Leucine-rich repeat; Ribosomal protein L24e-related... 0.02 OrthoFinder
EOD37636 No alias Ribosomal protein L24e-related [Interproscan]. 0.09 OrthoFinder
OT_15G03060.1 No alias Ribosomal protein L24e-related [Interproscan]. 0.23 OrthoFinder
Sro178_g078160.1 Contig275.g3541 60S ribosomal protein L24 0.57 OrthoFinder
SymbC1.scaffold1321.5 1321.5 Ribosomal protein L24e-related [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold4912.1 4912.1 Ribosomal protein L24e-related [Interproscan]. 0.01 OrthoFinder
TP03G04280.1 No alias Ribosomal protein L24e-related [Interproscan]. 0.43 OrthoFinder
Transcript_contig_59923 59923 Ribosomal protein L24e-related [Interproscan]. 0.08 OrthoFinder
Vocar.0056s0007.1 32896673 Ribosomal protein L24e-related [Interproscan]. 0.2 OrthoFinder
XM_003060067.1 MicpuC2_27633, 27633 Ribosomal protein L24e-related [Interproscan]. 0.16 OrthoFinder
lcl|BLLF01002834.1_cds_GFH25503.1_19980 HaLaN_23482, GFH25503 TRASH domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58569.1_8100 PRW58569 60S ribosomal L24-like 0.24 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497370.1_1099 KAA8497370 60S ribosomal protein L24 0.28 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000988 Ribosomal_L24e-rel 30 93
No external refs found!