PTI_04G04400.1


Description : Ribosomal protein S30 [Interproscan].


Gene families : OG_01_0004587 (OrthoFinder) Phylogenetic Tree(s): OG0004587_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G04400.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.33 tig00001003_g6288.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 OrthoFinder
Cre16.g666301 30777782, RPS30 Protein biosynthesis.cytosolic ribosome.small subunit... 0.4 OrthoFinder
EOD14554 No alias Ribosomal protein S30 [Interproscan]. 0.06 OrthoFinder
EOD23777 No alias Ribosomal protein S30 [Interproscan]. 0.06 OrthoFinder
OT_08G00570.1 No alias Ribosomal protein S30 [Interproscan]. 0.11 OrthoFinder
Sro1093_g240360.1 Contig384.g5162 40S ribosomal protein S30 0.44 OrthoFinder
SymbC1.scaffold1197.1 1197.1 Ribosomal protein S30 [Interproscan]. 0.03 OrthoFinder
TP01G05720.1 No alias Ribosomal protein S30 [Interproscan]. 0.1 OrthoFinder
Vocar.0066s0009.1 32891752 Ribosomal protein S30 [Interproscan]. 0.07 OrthoFinder
XM_002502986.1 MICPUN_59642, 59642 Ribosomal protein S30; Ribosomal protein S15 [Interproscan]. 0.36 OrthoFinder
XM_003058671.1 MicpuC2_57777, 57777 Ribosomal protein 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 3 62
No external refs found!