1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_04G03470.1

PTI_04G03470.1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0002251 (OrthoFinder) Phylogenetic Tree(s): OG0002251_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G03470.1
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021346.2 tig00021346_g20372.t1 DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa... 0.01 OrthoFinder
Cre07.g349300 30774622 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.03 OrthoFinder
Cz10g14210.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
OT_07G02410.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro248_g098230.1 Contig288.g3757 Dependent RNA helicase 0.03 OrthoFinder
TP16G01210.1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0011s0049.1 32895249 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.03 OrthoFinder
XM_002499572.1 MICPUN_67266, 67266 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51077.1_1015 PRW51077 DEAD-box ATP-dependent RNA helicase mitochondrial 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491854.1_4862 KAA8491854 DEAD-box ATP-dependent RNA helicase 47B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 615 722
IPR011545 DEAD/DEAH_box_helicase_dom 379 552
No external refs found!