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  5. PTI_04G03400.1

PTI_04G03400.1


Description : Tuftelin interacting protein, N-terminal domain; G-patch domain; GC-rich sequence DNA-binding factor-like domain [Interproscan].


Gene families : OG_01_0000707 (OrthoFinder) Phylogenetic Tree(s): OG0000707_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G03400.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cre07.g325713 30775336 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cz01g39050.t1 No alias GC-rich sequence DNA-binding factor-like domain [Interproscan]. 0.02 OrthoFinder
Cz01g39060.t1 No alias Tuftelin interacting protein, N-terminal domain; GC-rich... 0.03 OrthoFinder
Sro1159_g247650.1 Contig4112.g31383 Tuftelin-interacting protein 11 0.02 OrthoFinder
Transcript_contig_57908 57908 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_61238 61238 Hypothetical protein 0.01 OrthoFinder
Transcript_contig_78545 78545 GC-rich sequence DNA-binding factor-like domain; G-patch... 0.01 OrthoFinder
XM_002506749.1 MICPUN_113307, 113307 GC-rich sequence DNA-binding factor-like domain; G-patch... 0.02 OrthoFinder
XM_003061030.1 MicpuC2_35142, 35142 Tuftelin interacting protein, N-terminal domain; G-patch... 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56706.1_9507 PRW56706 Septin and tuftelin-interacting 1-like protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0016482 cytosolic transport IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030906 retromer, cargo-selective complex IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042147 retrograde transport, endosome to Golgi IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR022159 STIP/TFIP11_N 24 122
IPR000467 G_patch_dom 229 275
IPR022783 GCFC_dom 633 754
No external refs found!