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  5. PTI_04G03310.1

PTI_04G03310.1


Description : Ribosomal protein L6, alpha-beta domain [Interproscan].


Gene families : OG_01_0003467 (OrthoFinder) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G03310.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001532.12 tig00001532_g9278.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 OrthoFinder
Cre12.g494050 30792426, RPL9 Protein biosynthesis.cytosolic ribosome.large subunit... 0.41 OrthoFinder
Cz02g22040.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
Dusal.0391s00002.1 33187356 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.31 OrthoFinder
EOD38177 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.23 OrthoFinder
OT_04G01760.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.16 OrthoFinder
Sro227_g092220.1 Contig327.g4334 60S ribosomal protein L9 0.42 OrthoFinder
SymbC1.scaffold52.16 52.16 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold8093.1 8093.1 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
TP02G08750.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.22 OrthoFinder
Vocar.0031s0019.1 32890092 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.08 OrthoFinder
XM_002501436.1 MICPUN_106868, 106868 Ribosomal l9-like protein 0.26 OrthoFinder
XM_003057971.1 MicpuC2_32821, 32821 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58897.1_6880 PRW58897 60S ribosomal L9 0.18 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492880.1_2616 KAA8492880 60S ribosomal protein L9-2 0.14 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490502.1_4652 KAA8490502 60S ribosomal protein L9-2 0.14 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 102
IPR020040 Ribosomal_L6_a/b-dom 114 191
No external refs found!