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  5. PTI_04G01180.1

PTI_04G01180.1


Description : Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0001151 (OrthoFinder) Phylogenetic Tree(s): OG0001151_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G01180.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cz04g17260.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
Sro2_g001630.1 Contig467.g6321 Sex-regulated protein janus-B 0.03 OrthoFinder
Sro41_g025190.1 Contig169.g1925 RNA pseudouridine synthase 6, chloroplastic 0.03 OrthoFinder
TP04G01510.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.05 OrthoFinder
TP19G01490.1 No alias Pseudouridine synthase, RsuA/RluA; Janus [Interproscan]. 0.04 OrthoFinder
Vocar.0027s0196.1 32887263 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_002506180.1 MICPUN_64181, 64181 RNA pseudouridylate synthase 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492764.1_2500 KAA8492764 RNA pseudouridine synthase 6, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 239 422
No external refs found!