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  5. PTI_04G00620.1

PTI_04G00620.1


Description : Ribosomal protein L34Ae [Interproscan].


Gene families : OG_01_0004984 (OrthoFinder) Phylogenetic Tree(s): OG0004984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_04G00620.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000632.3 tig00000632_g2738.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
Cre16.g661050 30777324, RPL34 Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder
Dusal.0013s00032.1 33200934 Ribosomal protein L34Ae [Interproscan]. 0.2 OrthoFinder
OT_04G04220.1 No alias Ribosomal protein L34Ae [Interproscan]. 0.13 OrthoFinder
Sro327_g118460.1 Contig839.g9254 60S ribosomal protein L34 0.48 OrthoFinder
SymbC1.scaffold193.9 193.9 Ribosomal protein L34Ae [Interproscan]. 0.06 OrthoFinder
TP04G05710.1 No alias Ribosomal protein L34Ae [Interproscan]. 0.32 OrthoFinder
Vocar.0004s0133.1 32889701 Ribosomal protein L34Ae [Interproscan]. 0.13 OrthoFinder
XM_002504768.1 MICPUN_86588, 86588 Ribosomal protein L34Ae [Interproscan]. 0.21 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495412.1_1410 KAA8495412 60S ribosomal protein L34 0.14 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 11 96
No external refs found!