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  5. PTI_03G02600.1

PTI_03G02600.1


Description : Ribosomal protein S6e [Interproscan].


Gene families : OG_01_0002771 (OrthoFinder) Phylogenetic Tree(s): OG0002771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_03G02600.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.73 tig00000704_g3357.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 OrthoFinder
Cre09.g400650 30780656, RPS6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder
Cz06g36040.t1 No alias Ribosomal protein S6e [Interproscan]. 0.15 OrthoFinder
Dusal.0276s00013.1 33203073 Ribosomal protein S6e [Interproscan]. 0.06 OrthoFinder
EOD22278 No alias Ribosomal protein S6e [Interproscan]. 0.12 OrthoFinder
OT_03G02800.1 No alias Ribosomal protein S6e [Interproscan]. 0.22 OrthoFinder
Sro169_g075080.1 Contig4412.g33128 40S ribosomal protein S6 0.28 OrthoFinder
SymbC1.scaffold2867.6 2867.6 Ribosomal protein S6e [Interproscan]. 0.07 OrthoFinder
TP14G02490.1 No alias Ribosomal protein S6e [Interproscan]. 0.28 OrthoFinder
Transcript_contig_80061 80061 Ribosomal protein S6e [Interproscan]. 0.04 OrthoFinder
Vocar.0008s0246.1 32896957 Ribosomal protein S6e [Interproscan]. 0.06 OrthoFinder
XM_002499404.1 MICPUN_90125, 90125 Ribosomal protein S6e [Interproscan]. 0.21 OrthoFinder
XM_003055713.1 MicpuC2_49409, 49409 Ribosomal protein S6e [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01000178.1_cds_GFH08697.1_3174 HaLaN_03704, GFH08697 40S ribosomal protein S6 0.12 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44964.1_1851 PRW44964 40S ribosomal S6 isoform A 0.15 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494269.1_4133 KAA8494269 40S ribosomal protein S6 0.16 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
CC GO:0061617 MICOS complex IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 126
No external refs found!