PTI_03G01790.1

Description : Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0004731 (OrthoFinder) Phylogenetic Tree(s): OG0004731_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_03G01790.1
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
PTI_00G00610.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.12	OrthoFinder
PTI_01G01480.1	No alias	Integrase, catalytic core; Reverse transcriptase,...	0.2	OrthoFinder
PTI_01G08460.1	No alias	Hypothetical protein	0.1	OrthoFinder
PTI_01G08470.1	No alias	Hypothetical protein	0.12	OrthoFinder
PTI_02G02120.1	No alias	Hypothetical protein	0.13	OrthoFinder
PTI_07G01100.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.15	OrthoFinder
PTI_15G01640.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.06	OrthoFinder
PTI_18G00080.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.1	OrthoFinder
PTI_28G00010.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.15	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	277	292

External Links

No external refs found!