Description : Bromodomain; Helicase, C-terminal; Snf2, ATP coupling domain; SNF2-related, N-terminal domain [Interproscan].
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: PTI_02G06230.1 | |
Cluster | HCCA: Cluster_120 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000128.11 | tig00000128_g7211.t1 | ISWI chromatin-remodeling complex ATPase CHR17... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000217.25 | tig00000217_g19158.t1 | Chromatin structure-remodeling complex protein SYD... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000350.9 | tig00000350_g24309.t1 | CHD3-type chromatin-remodeling factor PICKLE... | 0.01 | OrthoFinder | |
Cpa|evm.model.tig00020848.66 | tig00020848_g14596.t1 | Probable helicase CHR10 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
Cpa|evm.model.tig00021275.25 | tig00021275_g19885.t1 | Probable chromatin-remodeling complex ATPase chain... | 0.01 | OrthoFinder | |
Cpa|evm.model.tig00021623.13 | tig00021623_g23013.t1 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.02 | OrthoFinder | |
Cre03.g179300 | 30786668 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder | |
Cre07.g325700 | 30774388 | ATP-dependent helicase BRM OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
Cre12.g508150 | 30793288 | Chromatin organisation.chromatin remodeling... | 0.01 | OrthoFinder | |
Cz01g25030.t1 | No alias | Helicase, C-terminal; Chromo domain; Domain of unknown... | 0.04 | OrthoFinder | |
Cz05g24240.t1 | No alias | SNF2-related, N-terminal domain; Helicase, C-terminal... | 0.02 | OrthoFinder | |
Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.03 | OrthoFinder | |
Dusal.0001s00013.1 | 33198814 | SNF2-related, N-terminal domain; Helicase, C-terminal;... | 0.01 | OrthoFinder | |
Dusal.0047s00031.1 | 33194295 | Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;... | 0.02 | OrthoFinder | |
Dusal.0280s00012.1 | 33203409 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
Dusal.0357s00004.1 | 33189829 | SNF2-related, N-terminal domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
EOD18155 | No alias | High mobility group box domain; ISWI, HAND domain;... | 0.02 | OrthoFinder | |
EOD25651 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
EOD27153 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
EOD34138 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
EOD34139 | No alias | Hypothetical protein [Ensembl]. | 0.01 | OrthoFinder | |
EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
OT_07G04400.1 | No alias | Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... | 0.02 | OrthoFinder | |
OT_11G00460.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
OT_12G02840.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
Sro272_g104840.1 | Contig2144.g18025 | Chromodomain-helicase-DNA-binding protein | 0.03 | OrthoFinder | |
Sro386_g131880.1 | Contig4061.g31129 | Regulator of chromatin subfamily A containing DEAD/H box 1 | 0.03 | OrthoFinder | |
Sro566_g167850.1 | Contig3739.g28680 | ISWI chromatin-remodeling complex ATPase ISW2 | 0.03 | OrthoFinder | |
Sro860_g212120.1 | Contig2239.g18594 | ISWI chromatin-remodeling complex ATPase ISW2 | 0.02 | OrthoFinder | |
Transcript_contig_67500 | 67500 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
XM_002503134.1 | MICPUN_59225, 59225 | SNF2 super family | 0.02 | OrthoFinder | |
XM_002504726.1 | MICPUN_62221, 62221 | SNF2 super family | 0.02 | OrthoFinder | |
XM_002508085.1 | MICPUN_60550, 60550 | SNF2 super family | 0.01 | OrthoFinder | |
lcl|BLLF01000001.1_cds_GFH05550.1_27 | HaLaN_00030, GFH05550 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|BLLF01000629.1_cds_GFH13581.1_8058 | HaLaN_09499, GFH13581 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|BLLF01000629.1_cds_GFH13582.1_8059 | HaLaN_09500, GFH13582 | Helicase, C-terminal [Interproscan]. | 0.01 | OrthoFinder | |
lcl|BLLF01001410.1_cds_GFH19126.1_13603 | HaLaN_16027, GFH19126 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
lcl|BLLF01003474.1_cds_GFH27437.1_21914 | HaLaN_25757, GFH27437 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|BLLF01006096.1_cds_GFH31943.1_26420 | HaLaN_31078, GFH31943 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.02 | OrthoFinder | |
lcl|LHPG02000008.1_cds_PRW56604.1_9911 | PRW56604 | CHROMATIN REMODELING 19 | 0.03 | OrthoFinder | |
lcl|LHPG02000008.1_cds_PRW56740.1_9705 | PRW56740 | Chromatin-remodeling complex ATPase chain | 0.03 | OrthoFinder | |
lcl|VRMN01000010.1_cds_KAA8492149.1_5332 | KAA8492149 | Chromodomain-helicase-DNA-binding protein 6 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
MF | GO:0042393 | histone binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004402 | histone acetyltransferase activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006325 | chromatin organization | IEP | Enrichment |
BP | GO:0006338 | chromatin remodeling | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006473 | protein acetylation | IEP | Enrichment |
BP | GO:0006475 | internal protein amino acid acetylation | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
BP | GO:0008272 | sulfate transport | IEP | Enrichment |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Enrichment |
MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016197 | endosomal transport | IEP | Enrichment |
BP | GO:0016482 | cytosolic transport | IEP | Enrichment |
BP | GO:0016573 | histone acetylation | IEP | Enrichment |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Enrichment |
BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Enrichment |
BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Enrichment |
CC | GO:0030906 | retromer, cargo-selective complex | IEP | Enrichment |
MF | GO:0034061 | DNA polymerase activity | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Enrichment |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
BP | GO:0034728 | nucleosome organization | IEP | Enrichment |
BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Enrichment |
BP | GO:0043486 | histone exchange | IEP | Enrichment |
MF | GO:0043531 | ADP binding | IEP | Enrichment |
BP | GO:0043543 | protein acylation | IEP | Enrichment |
BP | GO:0043631 | RNA polyadenylation | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Enrichment |
MF | GO:0070566 | adenylyltransferase activity | IEP | Enrichment |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Enrichment |
BP | GO:0072348 | sulfur compound transport | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Enrichment |
No external refs found! |