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  5. PTI_02G05950.1

PTI_02G05950.1


Description : U3 small nucleolar RNA-associated protein 15, C-terminal; WD40 repeat [Interproscan].


Gene families : OG_01_0002703 (OrthoFinder) Phylogenetic Tree(s): OG0002703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G05950.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020927.23 tig00020927_g15952.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre03.g196850 30787480 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder
Cz10g12180.t1 No alias U3 small nucleolar RNA-associated protein 15,... 0.09 OrthoFinder
EOD28493 No alias U3 small nucleolar RNA-associated protein 15,... 0.09 OrthoFinder
EOD39299 No alias U3 small nucleolar RNA-associated protein 15,... 0.07 OrthoFinder
OT_15G01400.1 No alias WD40 repeat; U3 small nucleolar RNA-associated protein... 0.16 OrthoFinder
Sro203_g085690.1 Contig1270.g11863 Associated protein 15 homolog 0.19 OrthoFinder
TP06G01700.1 No alias WD40 repeat; U3 small nucleolar RNA-associated protein... 0.02 OrthoFinder
Vocar.0011s0312.1 32895259 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.02 OrthoFinder
XM_002502959.1 MICPUN_108508, 108508 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.1 OrthoFinder
XM_003058696.1 MicpuC2_67965, 67965 U3 small nucleolar RNA-associated protein 15,... 0.07 OrthoFinder
lcl|BLLF01002027.1_cds_GFH22370.1_16847 HaLaN_19826, GFH22370 WD_REPEATS_REGION domain-containing protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497875.1_6828 KAA8497875 U3 small nucleolar RNA-associated protein 15-like 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 460 599
IPR001680 WD40_repeat 191 212
IPR001680 WD40_repeat 225 271
No external refs found!