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  5. PTI_02G05820.1

PTI_02G05820.1


Description : Zinc finger, C2H2, LYAR-type [Interproscan].


Gene families : OG_01_0004222 (OrthoFinder) Phylogenetic Tree(s): OG0004222_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G05820.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.21 tig00000383_g24632.t1 No description available 0.09 OrthoFinder
Cre17.g701050 30781632 No description available 0.1 OrthoFinder
Cz03g20200.t1 No alias Zinc finger, C2H2, LYAR-type; Zinc-finger of C2H2 type... 0.06 OrthoFinder
EOD24439 No alias Zinc finger, C2H2, LYAR-type [Interproscan]. 0.04 OrthoFinder
EOD25623 No alias Zinc finger, C2H2, LYAR-type [Interproscan]. 0.02 OrthoFinder
Sro361_g126460.1 Contig1094.g10571 Cell growth-regulating nucleolar protein 0.09 OrthoFinder
TP06G02790.1 No alias Zinc finger, C2H2, LYAR-type [Interproscan]. 0.07 OrthoFinder
Vocar.0004s0208.1 32889821 Zinc finger, C2H2, LYAR-type [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61446.1_312 PRW61446 UBP1-associated s 1C 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR014898 Znf_C2H2_LYAR 31 58
No external refs found!