- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : LSM domain, eukaryotic/archaea-type [Interproscan].
Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_02G04920.1 | |
| Cluster | HCCA: Cluster_102 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000944.19 | tig00000944_g5941.t1 | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder | |
| EOD19720 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.01 | OrthoFinder | |
| XM_003060799.1 | MicpuC2_19555, 19555 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Enrichment |
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0004177 | aminopeptidase activity | IEP | Enrichment |
| BP | GO:0005976 | polysaccharide metabolic process | IEP | Enrichment |
| BP | GO:0006073 | cellular glucan metabolic process | IEP | Enrichment |
| BP | GO:0006077 | (1->6)-beta-D-glucan metabolic process | IEP | Enrichment |
| BP | GO:0006078 | (1->6)-beta-D-glucan biosynthetic process | IEP | Enrichment |
| BP | GO:0006333 | chromatin assembly or disassembly | IEP | Enrichment |
| BP | GO:0009250 | glucan biosynthetic process | IEP | Enrichment |
| MF | GO:0016763 | pentosyltransferase activity | IEP | Enrichment |
| BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0044042 | glucan metabolic process | IEP | Enrichment |
| BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Enrichment |
| BP | GO:0051273 | beta-glucan metabolic process | IEP | Enrichment |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Enrichment |
| MF | GO:0070403 | NAD+ binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 34 | 93 |
| No external refs found! |