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  5. PTI_02G04650.1

PTI_02G04650.1


Description : C2 domain; Copine [Interproscan].


Gene families : OG_01_0000243 (OrthoFinder) Phylogenetic Tree(s): OG0000243_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_02G04650.1
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020911.28 tig00020911_g15730.t1 Protein BONZAI 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Sro1305_g261150.1 Contig1643.g14829 Copine-6 0.02 OrthoFinder
Sro2415_g326840.1 Contig2132.g17978 Copine-1 0.02 OrthoFinder
Transcript_contig_79008 79008 Copine [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45322.1_1222 PRW45322 Copine-8 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497706.1_6659 KAA8497706 Copine-8 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004668 protein-arginine deiminase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
BP GO:0009445 putrescine metabolic process IEP Enrichment
BP GO:0009446 putrescine biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000008 C2_dom 9 102
IPR000008 C2_dom 132 228
IPR010734 Copine_C 323 526
No external refs found!