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Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].
Gene families : OG_01_0000066 (OrthoFinder) Phylogenetic Tree(s): OG0000066_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_01G11830.1 | |
| Cluster | HCCA: Cluster_33 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PTI_00G01650.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_00G02190.1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
| PTI_00G02240.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.08 | OrthoFinder | |
| PTI_00G02270.1 | No alias | Hypothetical protein | 0.04 | OrthoFinder | |
| PTI_00G04610.1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
| PTI_01G08080.1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
| PTI_03G00500.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| PTI_03G00510.1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
| PTI_03G05910.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_03G05950.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.08 | OrthoFinder | |
| PTI_03G05970.1 | No alias | Hypothetical protein | 0.05 | OrthoFinder | |
| PTI_04G00260.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_06G03610.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
| PTI_11G04470.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
| PTI_12G02230.1 | No alias | Hypothetical protein | 0.08 | OrthoFinder | |
| PTI_13G00310.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| PTI_16G00110.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.03 | OrthoFinder | |
| PTI_17G02300.1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
| PTI_18G00100.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.05 | OrthoFinder | |
| PTI_18G02830.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_18G02850.1 | No alias | Hypothetical protein | 0.03 | OrthoFinder | |
| PTI_18G02920.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
| PTI_19G03110.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
| PTI_23G02270.1 | No alias | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| PTI_24G01650.1 | No alias | Hypothetical protein | 0.07 | OrthoFinder | |
| PTI_27G01670.1 | No alias | Hypothetical protein | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Enrichment |
| MF | GO:0004683 | calmodulin-dependent protein kinase activity | IEP | Enrichment |
| MF | GO:0005516 | calmodulin binding | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| CC | GO:0018995 | host cellular component | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0033643 | host cell part | IEP | Enrichment |
| CC | GO:0033646 | host intracellular part | IEP | Enrichment |
| CC | GO:0033647 | host intracellular organelle | IEP | Enrichment |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0042025 | host cell nucleus | IEP | Enrichment |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013103 | RVT_2 | 13 | 190 |
| No external refs found! |