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  5. PTI_01G09850.1

PTI_01G09850.1


Description : Ribosomal protein L27e; KOW [Interproscan].


Gene families : OG_01_0004223 (OrthoFinder) Phylogenetic Tree(s): OG0004223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G09850.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021275.23 tig00021275_g19883.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.4 OrthoFinder
Cre17.g701650 30782062, RPL27 Protein biosynthesis.cytosolic ribosome.large subunit... 0.45 OrthoFinder
Cz04g09100.t1 No alias Ribosomal protein L27e [Interproscan]. 0.3 OrthoFinder
Dusal.2138s00001.1 33185794 Ribosomal protein L27e; KOW [Interproscan]. 0.25 OrthoFinder
EOD36904 No alias Ribosomal protein L27e [Interproscan]. 0.28 OrthoFinder
OT_05G00120.1 No alias KOW; Ribosomal protein L27e [Interproscan]. 0.32 OrthoFinder
Sro245_g097440.1 Contig3087.g24615 60S ribosomal protein L27 0.63 OrthoFinder
SymbC1.scaffold7526.4 7526.4 Ribosomal protein L27e [Interproscan]. 0.06 OrthoFinder
TP15G01980.1 No alias Ribosomal protein L27e [Interproscan]. 0.42 OrthoFinder
Vocar.0004s0217.1 32889937 Ribosomal protein L27e; KOW [Interproscan]. 0.11 OrthoFinder
XM_002504400.1 MICPUN_107054, 107054 Ribosomal protein L27e [Interproscan]. 0.53 OrthoFinder
XM_003059887.1 MicpuC2_34421, 34421 Ribosomal protein L27e [Interproscan]. 0.16 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05844.1_6023 PRW05844 60S ribosomal L27-3-like 0.2 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495086.1_3616 KAA8495086 60S ribosomal protein L27-B 0.34 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005824 KOW 7 31
IPR001141 Ribosomal_L27e 52 145
No external refs found!