1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_01G09180.1

PTI_01G09180.1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001406 (OrthoFinder) Phylogenetic Tree(s): OG0001406_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G09180.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Sro1521_g279460.1 Contig1605.g14550 Dependent RNA helicase 0.01 OrthoFinder
Sro89_g047180.1 Contig3846.g29639 Dependent RNA helicase 0.02 OrthoFinder
Transcript_contig_89328 89328 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Vocar.0041s0061.1 32888707 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
XM_002506822.1 MICPUN_89111, 89111 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 106 283
IPR001650 Helicase_C 331 437
No external refs found!