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  5. PTI_01G08180.1

PTI_01G08180.1


Description : Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G08180.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cz03g05220.t1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
Cz15g12010.t1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.03 OrthoFinder
OT_06G03410.1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.02 OrthoFinder
Sro1238_g255270.1 Contig4178.g31874 5'-3' exoribonuclease 2 0.01 OrthoFinder
Sro386_g131870.1 Contig4061.g31128 5'-3' exoribonuclease 1 0.03 OrthoFinder
Transcript_contig_54005 54005 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56045 56045 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, D1... 0.02 OrthoFinder
XM_003061918.1 MicpuC2_21065, 21065 Putative 5-3 exonuclease [Interproscan]. 0.02 OrthoFinder
XM_003061919.1 MicpuC2_69996, 69996 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59001.1_7182 PRW59001 5-3 exoribonuclease 1 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499911.1_8864 KAA8499911 5'-3' exoribonuclease 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004806 triglyceride lipase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 276 497
IPR004859 Put_53exo 1 226
No external refs found!