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Description : 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical domain; Xrn1, D1 domain [Interproscan].
Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_01G08170.1 | |
| Cluster | HCCA: Cluster_100 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001164.8 | tig00001164_g7398.t1 | 5-3 exoribonuclease 2 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cre08.g373916 | 30773925 | 5-3 exoribonuclease 2 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
| Cre16.g679900 | 30777977, XRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.04 | OrthoFinder | |
| Cz03g05220.t1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0001s00024.1 | 33198788 | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.03 | OrthoFinder | |
| EOD36897 | No alias | Putative 5-3 exonuclease [Interproscan]. | 0.02 | OrthoFinder | |
| OT_06G03410.1 | No alias | Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... | 0.03 | OrthoFinder | |
| Sro386_g131870.1 | Contig4061.g31128 | 5'-3' exoribonuclease 1 | 0.03 | OrthoFinder | |
| Sro654_g182080.1 | Contig1277.g11898 | 5'-3' exoribonuclease | 0.02 | OrthoFinder | |
| Sro662_g183380.1 | Contig3613.g27932 | 5'-3' exoribonuclease | 0.02 | OrthoFinder | |
| Vocar.0018s0127.1 | 32898571 | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.01 | OrthoFinder | |
| XM_003061919.1 | MicpuC2_69996, 69996 | 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000004.1_cds_PRW59001.1_7182 | PRW59001 | 5-3 exoribonuclease 1 | 0.03 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57491.1_8980 | PRW57491 | 5-3 exoribonuclease 2 | 0.01 | OrthoFinder | |
| lcl|VRMN01000004.1_cds_KAA8494597.1_3127 | KAA8494597 | 5'-3' exoribonuclease 2-like | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006644 | phospholipid metabolic process | IEP | Enrichment |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| BP | GO:0008380 | RNA splicing | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Enrichment |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Enrichment |
| MF | GO:0017069 | snRNA binding | IEP | Enrichment |
| MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
| MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | Enrichment |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| No external refs found! |