PTI_01G08170.1


Description : 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical domain; Xrn1, D1 domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G08170.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001164.8 tig00001164_g7398.t1 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre08.g373916 30773925 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre16.g679900 30777977, XRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz03g05220.t1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.03 OrthoFinder
Dusal.0001s00024.1 33198788 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.03 OrthoFinder
EOD36897 No alias Putative 5-3 exonuclease [Interproscan]. 0.02 OrthoFinder
OT_06G03410.1 No alias Putative 5-3 exonuclease; 5'-3' exoribonuclease 1,... 0.03 OrthoFinder
Sro386_g131870.1 Contig4061.g31128 5'-3' exoribonuclease 1 0.03 OrthoFinder
Sro654_g182080.1 Contig1277.g11898 5'-3' exoribonuclease 0.02 OrthoFinder
Sro662_g183380.1 Contig3613.g27932 5'-3' exoribonuclease 0.02 OrthoFinder
Vocar.0018s0127.1 32898571 Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.01 OrthoFinder
XM_003061919.1 MicpuC2_69996, 69996 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59001.1_7182 PRW59001 5-3 exoribonuclease 1 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57491.1_8980 PRW57491 5-3 exoribonuclease 2 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494597.1_3127 KAA8494597 5'-3' exoribonuclease 2-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 4 104
IPR040992 XRN1_D1 163 341
IPR041385 SH3_12 633 698
No external refs found!