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  5. PTI_01G07740.1

PTI_01G07740.1


Description : Serine hydroxymethyltransferase-like domain [Interproscan].


Gene families : OG_01_0000330 (OrthoFinder) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G07740.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.25 tig00020903_g15092.t1 Enzyme classification.EC_2 transferases.EC_2.1... 0.02 OrthoFinder
Cre16.g664550 30776923, SHMT1 Amino acid metabolism.biosynthesis.serine... 0.03 OrthoFinder
Cz03g20190.t1 No alias Serine hydroxymethyltransferase-like domain [Interproscan]. 0.04 OrthoFinder
OT_14G02690.1 No alias Serine hydroxymethyltransferase-like domain [Interproscan]. 0.04 OrthoFinder
Sro30_g019890.1 Contig3962.g30389 Serine hydroxymethyltransferase 0.03 OrthoFinder
SymbC1.scaffold380.5 380.5 Methylenetetrahydrofolate reductase; Serine... 0.01 OrthoFinder
SymbC1.scaffold5445.4 5445.4 Serine hydroxymethyltransferase-like domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold9671.2 9671.2 Serine hydroxymethyltransferase-like domain [Interproscan]. 0.02 OrthoFinder
TP18G01090.1 No alias Serine hydroxymethyltransferase-like domain [Interproscan]. 0.03 OrthoFinder
Vocar.0041s0018.1 32888726 Serine hydroxymethyltransferase-like domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61055.1_24 PRW61055 Serine hydroxymethyltransferase 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495612.1_1610 KAA8495612 Serine hydroxymethyltransferase 2, mitochondrial 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
BP GO:0006544 glycine metabolic process IEP Enrichment
BP GO:0006546 glycine catabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009071 serine family amino acid catabolic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 32 428
No external refs found!