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  5. PTI_01G06160.1

PTI_01G06160.1


Description : RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 [Interproscan].


Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: PTI_01G06160.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
OT_06G01070.1 No alias RNA polymerase sigma-70 region 3; RNA polymerase... 0.03 OrthoFinder
Sro1407_g270010.1 Contig1773.g15694 Sigma factor SigA 0.02 OrthoFinder
Sro151_g069270.1 Contig294.g3853 Sigma factor SigA 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 609 661
IPR007627 RNA_pol_sigma70_r2 428 497
IPR007624 RNA_pol_sigma70_r3 508 569
No external refs found!