PTI_01G05840.1

Description : Ribosome biogenesis protein BMS1/TSR1, C-terminal; AARP2CN; Ethanolamine/propanediol utilisation protein, EutP/PduV [Interproscan].

Gene families : OG_01_0003800 (OrthoFinder) Phylogenetic Tree(s): OG0003800_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_01G05840.1
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000478.23	tig00000478_g1271.t1	No description available	0.03	OrthoFinder
Cre10.g445600	30790575	No description available	0.12	OrthoFinder
Cz08g02110.t1	No alias	AARP2CN; Ribosome biogenesis protein BMS1/TSR1,...	0.08	OrthoFinder
EOD33430	No alias	AARP2CN; Ribosome biogenesis protein BMS1/TSR1,...	0.03	OrthoFinder
OT_12G02080.1	No alias	AARP2CN; Ribosome biogenesis protein BMS1/TSR1,...	0.11	OrthoFinder
Sro363_g126850.1	Contig698.g8124	Ribosome biogenesis protein BMS1	0.18	OrthoFinder
SymbC1.scaffold451.2	451.2	ATPase, AAA-type, core; Ribosome biogenesis protein...	0.02	OrthoFinder
Transcript_contig_57614	57614	ATPase, AAA-type, core; AARP2CN [Interproscan].	0.03	OrthoFinder
Vocar.0026s0056.1	32892545	Ribosome biogenesis protein BMS1/TSR1, C-terminal;...	0.02	OrthoFinder
XM_003054849.1	MicpuC2_30726, 30726	Ribosome biogenesis protein BMS1/TSR1, C-terminal;...	0.02	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492526.1_9219	KAA8492526	Ribosome biogenesis protein bms1	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006576	cellular biogenic amine metabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0030488	tRNA methylation	IEP	Enrichment
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
CC	GO:0034708	methyltransferase complex	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043414	macromolecule methylation	IEP	Enrichment
CC	GO:0043527	tRNA methyltransferase complex	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012381	EutP_PduV	87	213
IPR012948	AARP2CN	233	318
IPR007034	BMS1_TSR1_C	717	1015

External Links

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PTI_01G05840.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation