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  5. PTI_01G05780.1

PTI_01G05780.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0001774 (OrthoFinder) Phylogenetic Tree(s): OG0001774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G05780.1
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.44 tig00020904_g15177.t1 Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
SymbC1.scaffold5543.1 5543.1 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
TP02G08260.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494563.1_3093 KAA8494563 Flowering time control protein FCA 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
CC GO:0030915 Smc5-Smc6 complex IEP Enrichment
BP GO:0032048 cardiolipin metabolic process IEP Enrichment
BP GO:0032049 cardiolipin biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046471 phosphatidylglycerol metabolic process IEP Enrichment
BP GO:0046474 glycerophospholipid biosynthetic process IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0106068 SUMO ligase complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 199 262
IPR000504 RRM_dom 113 177
IPR000504 RRM_dom 390 460
No external refs found!