1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_01G05180.1

PTI_01G05180.1


Description : Ribosomal protein S9 [Interproscan].


Gene families : OG_01_0003842 (OrthoFinder) Phylogenetic Tree(s): OG0003842_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G05180.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000123.14 tig00000123_g6920.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 OrthoFinder
Cre13.g573351 30784543 Protein biosynthesis.cytosolic ribosome.small subunit... 0.36 OrthoFinder
Cz19g06110.t1 No alias Ribosomal protein S9 [Interproscan]. 0.06 OrthoFinder
Dusal.0024s00015.1 33202210 Ribosomal protein S9 [Interproscan]. 0.23 OrthoFinder
OT_05G03950.1 No alias Ribosomal protein S9 [Interproscan]. 0.32 OrthoFinder
Sro245_g097460.1 Contig3087.g24617 40S ribosomal protein S16 0.5 OrthoFinder
TP04G04250.1 No alias Ribosomal protein S9 [Interproscan]. 0.42 OrthoFinder
Transcript_contig_90600 90600 Ribosomal protein S9 [Interproscan]. 0.05 OrthoFinder
Vocar.0001s0196.1 32884947 Ribosomal protein S9 [Interproscan]. 0.14 OrthoFinder
XM_002500943.1 MICPUN_93705, 93705 Ribosomal protein S9 [Interproscan]. 0.38 OrthoFinder
XM_003056840.1 MicpuC2_62402, 62402 Ribosomal protein S9 [Interproscan]. 0.13 OrthoFinder
lcl|BLLF01003005.1_cds_GFH26056.1_20533 HaLaN_24137, GFH26056 Ribosomal protein S9 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003770.1_cds_GFH28167.1_22644 HaLaN_26611, GFH28167 Ribosomal protein S9 [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57188.1_8811 PRW57188 40S ribosomal S16 0.37 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499795.1_8748 KAA8499795 40S ribosomal protein S16-1 0.25 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 11 143
No external refs found!