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  5. PTI_01G03990.1

PTI_01G03990.1


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan].


Gene families : OG_01_0002711 (OrthoFinder) Phylogenetic Tree(s): OG0002711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_01G03990.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.34 tig00020903_g15101.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre04.g214503 30791056 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cz09g18090.t1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.06 OrthoFinder
Cz12g15120.t1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.06 OrthoFinder
Dusal.0081s00006.1 33198226 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.02 OrthoFinder
EOD10673 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.04 OrthoFinder
OT_06G01150.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.04 OrthoFinder
Sro1183_g250060.1 Contig238.g2905 40S ribosomal protein S12 0.07 OrthoFinder
Vocar.0025s0148.1 32898334 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.06 OrthoFinder
XM_003059134.1 MicpuC2_49622, 49622 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497927.1_6880 KAA8497927 40S ribosomal protein S12 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 27 118
No external refs found!