PTI_00G04380.1

Description : GAG-pre-integrase domain; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0006725 (OrthoFinder) Phylogenetic Tree(s): OG0006725_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_00G04380.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
PTI_00G00400.1	No alias	Zinc finger, CCHC-type [Interproscan].	0.03	OrthoFinder
PTI_07G01590.1	No alias	Hypothetical protein	0.03	OrthoFinder
PTI_07G01600.1	No alias	Hypothetical protein	0.05	OrthoFinder
PTI_07G01610.1	No alias	Hypothetical protein	0.03	OrthoFinder
PTI_19G01170.1	No alias	GAG-pre-integrase domain; Zinc finger, CCHC-type [Interproscan].	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016832	aldehyde-lyase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	764	826
IPR001878	Znf_CCHC	366	382

External Links

No external refs found!