PTI_00G04260.1

Description : RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit [Interproscan].

Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_00G04260.1
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000203.25	tig00000203_g17130.t1	DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre12.g529600	30792110	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.15	OrthoFinder
Cz05g31150.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.14	OrthoFinder
Dusal.0073s00015.1	33194603	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.04	OrthoFinder
EOD22189	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.11	OrthoFinder
OT_14G01020.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.11	OrthoFinder
Sro258_g101130.1	Contig315.g4199	DNA-directed RNA polymerase subunit beta' (Fragment)	0.11	OrthoFinder
TP06G00570.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.07	OrthoFinder
Vocar.0037s0083.1	32897652	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.03	OrthoFinder
XM_002505754.1	MICPUN_65110, 65110	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.1	OrthoFinder
XM_003063796.1	MicpuC2_36623, 36623	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.04	OrthoFinder
lcl\|BLLF01001934.1_cds_GFH21937.1_16414	HaLaN_19326, GFH21937	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|BLLF01001934.1_cds_GFH21938.1_16415	HaLaN_19327, GFH21938	DNA-directed RNA polymerase subunit	0.03	OrthoFinder
lcl\|BLLF01002728.1_cds_GFH25131.1_19608	HaLaN_23045, GFH25131	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|BLLF01007679.1_cds_GFH33063.1_27540	HaLaN_32376, GFH33063	DNA-directed RNA polymerase subunit	0.03	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW58030.1_8585	PRW58030	DNA-directed RNA polymerase I complex large subunit Nuc1...	0.09	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8493983.1_3847	KAA8493983	DNA-directed RNA polymerase I subunit rpa1	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003724	RNA helicase activity	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
MF	GO:0004527	exonuclease activity	IEP	Enrichment
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006551	leucine metabolic process	IEP	Enrichment
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
BP	GO:0009098	leucine biosynthetic process	IEP	Enrichment
BP	GO:0009308	amine metabolic process	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
CC	GO:0030684	preribosome	IEP	Enrichment
MF	GO:0031369	translation initiation factor binding	IEP	Enrichment
MF	GO:0031406	carboxylic acid binding	IEP	Enrichment
MF	GO:0031418	L-ascorbic acid binding	IEP	Enrichment
CC	GO:0032040	small-subunit processome	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0044106	cellular amine metabolic process	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment
MF	GO:0048029	monosaccharide binding	IEP	Enrichment
MF	GO:0051213	dioxygenase activity	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	930	1007
IPR007081	RNA_pol_Rpb1_5	1014	1723
IPR007080	RNA_pol_Rpb1_1	17	465
IPR007066	RNA_pol_Rpb1_3	648	838
IPR000722	RNA_pol_asu	467	643

External Links

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PTI_00G04260.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation