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  5. OT_17G02300.1

OT_17G02300.1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000110 (OrthoFinder) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_17G02300.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cre01.g021600 30789366 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre12.g539100 30792646 DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa... 0.12 OrthoFinder
Cre12.g540200 30792196 DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.1 OrthoFinder
Cz05g24090.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Cz07g14080.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
Cz11g20100.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Dusal.0077s00030.1 33192455 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Dusal.0466s00003.1 33194842 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
EOD29280 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
EOD38751 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.09 OrthoFinder
PTI_00G03690.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.15 OrthoFinder
PTI_04G04860.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.16 OrthoFinder
Sro1046_g235060.1 Contig1884.g16427 Dependent RNA helicase 0.13 OrthoFinder
Sro1103_g241740.1 Contig4430.g33251 Dependent RNA helicase 0.07 OrthoFinder
Sro3572_g349270.1 Contig4413.g33150 RNA helicase DBP2 0.02 OrthoFinder
TP01G06480.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
TP03G06040.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.12 OrthoFinder
Transcript_contig_56606 56606 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
Transcript_contig_56629 56629 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Vocar.0007s0049.1 32888024 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.08 OrthoFinder
XM_002499634.1 MICPUN_67469, 67469 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.16 OrthoFinder
XM_002502614.1 MICPUN_58886, 58886 DEAD/DEAH box helicase 0.13 OrthoFinder
XM_002504616.1 MICPUN_97883, 97883 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.17 OrthoFinder
XM_002506543.1 MICPUN_98380, 98380 Dead-box ATP-dependent RNA helicase 0.04 OrthoFinder
XM_003058098.1 MicpuC2_16111, 16111 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_003063731.1 MicpuC2_22564, 22564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
XM_003064188.1 MicpuC2_46013, 46013 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003064706.1 MicpuC2_45119, 45119 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.09 OrthoFinder
lcl|BLLF01000115.1_cds_GFH07782.1_2259 HaLaN_02635, GFH07782 DEAD box RNA helicase 0.01 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17278.1_11755 HaLaN_13879, GFH17278 DEAD box RNA helicase 0.01 OrthoFinder
lcl|BLLF01001123.1_cds_GFH17279.1_11756 HaLaN_13880, GFH17279 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59081.1_7009 PRW59081 DEAD-box ATP-dependent RNA helicase 20-like 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498053.1_7006 KAA8498053 DEAD-box ATP-dependent RNA helicase 5 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 336 448
IPR011545 DEAD/DEAH_box_helicase_dom 110 299
No external refs found!