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  5. OT_17G01910.1

OT_17G01910.1


Description : ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain; NVL2, nucleolin binding domain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_17G01910.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000525.10 tig00000525_g1953.t1 Cell division control protein 48 homolog C... 0.03 OrthoFinder
Cre09.g398550 30781371 Cell division control protein 48 homolog C... 0.04 OrthoFinder
EOD18732 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.03 OrthoFinder
Sro1493_g277320.1 Contig1998.g17101 Metalloprotease FTSH 0.01 OrthoFinder
Vocar.0006s0118.1 32893929 NVL2, nucleolin binding domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Vocar.0021s0058.1 32896069 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
XM_002500797.1 MICPUN_79795, 79795 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.08 OrthoFinder
XM_003059387.1 MicpuC2_33829, 33829 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.04 OrthoFinder
lcl|BLLF01001898.1_cds_GFH21752.1_16229 HaLaN_19115, GFH21752 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57417.1_8902 PRW57417 Ribosome biogenesis ATPase RIX7 0.05 OrthoFinder
lcl|LHPG02000020.1_cds_PRW21077.1_4820 PRW21077 Peroxisome biogenesis 6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 340 482
IPR003959 ATPase_AAA_core 657 787
IPR031996 NVL2_nucleolin-bd 21 89
IPR041569 AAA_lid_3 506 546
IPR041569 AAA_lid_3 810 860
No external refs found!