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  5. OT_17G00440.1

OT_17G00440.1


Description : Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_17G00440.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Sro102_g052200.1 Contig319.g4264 Pseudouridine synthase C 0.03 OrthoFinder
Sro99_g050910.1 Contig1378.g12662 Ribosomal large subunit pseudouridine synthase D 0.02 OrthoFinder
Vocar.0005s0224.1 32883863 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Vocar.0054s0020.1 32894630 Hypothetical protein 0.03 OrthoFinder
XM_003064098.1 MicpuC2_36806, 36806 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 152 322
No external refs found!