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  5. OT_16G00070.1

OT_16G00070.1


Description : Ribosomal protein S27e [Interproscan].


Gene families : OG_01_0000897 (OrthoFinder) Phylogenetic Tree(s): OG0000897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_16G00070.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001299.2 tig00001299_g8061.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre12.g529400 30792485, RPS27e1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Dusal.0308s00024.1 33194639 Ribosomal protein S27e [Interproscan]. 0.04 OrthoFinder
EOD06206 No alias Ribosomal protein S27e [Interproscan]. 0.06 OrthoFinder
EOD35321 No alias Ribosomal protein S27e [Interproscan]. 0.06 OrthoFinder
PTI_00G03050.1 No alias Ribosomal protein S27e [Interproscan]. 0.07 OrthoFinder
TP14G02220.1 No alias Ribosomal protein S27e [Interproscan]. 0.09 OrthoFinder
Vocar.0037s0078.1 32897515 Ribosomal protein S27e [Interproscan]. 0.07 OrthoFinder
XM_002502682.1 MICPUN_108364, 108364 Ribosomal protein S27e [Interproscan]. 0.16 OrthoFinder
lcl|BLLF01002835.1_cds_GFH25509.1_19986 HaLaN_23488, GFH25509 40S ribosomal protein S27 0.02 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05814.1_5981 PRW05814 Plant intracellular Ras-group-related LRR 7 isoform B 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004615 phosphomannomutase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Enrichment
BP GO:0009298 GDP-mannose biosynthetic process IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019673 GDP-mannose metabolic process IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000592 Ribosomal_S27 30 84
No external refs found!