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  5. OT_15G01720.1

OT_15G01720.1


Description : Ribosomal biogenesis regulatory protein [Interproscan].


Gene families : OG_01_0003990 (OrthoFinder) Phylogenetic Tree(s): OG0003990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_15G01720.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.62 tig00000215_g18600.t1 Ribosome biogenesis regulatory protein homolog... 0.06 OrthoFinder
Cre01.g020950 30788544 Ribosome biogenesis regulatory protein homolog... 0.11 OrthoFinder
Cz07g15250.t1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.04 OrthoFinder
Dusal.0009s00008.1 33190462 Ribosomal biogenesis regulatory protein [Interproscan]. 0.03 OrthoFinder
EOD32863 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.03 OrthoFinder
PTI_07G04280.1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.12 OrthoFinder
Sro147_g067750.1 Contig246.g2998 Biogenesis regulatory protein homolog 0.11 OrthoFinder
Vocar.0045s0018.1 32887802 Ribosomal biogenesis regulatory protein [Interproscan]. 0.03 OrthoFinder
XM_002504986.1 MICPUN_62728, 62728 Ribosomal biogenesis regulatory protein [Interproscan]. 0.09 OrthoFinder
XM_003060538.1 MicpuC2_59933, 59933 Ribosomal biogenesis regulatory protein [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000245.1_cds_GFH09582.1_4059 HaLaN_04757, GFH09582 Ribosome biogenesis regulatory protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 25 191
No external refs found!