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  5. OT_15G00990.1

OT_15G00990.1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0000781 (OrthoFinder) Phylogenetic Tree(s): OG0000781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_15G00990.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020531.55 tig00020531_g10061.t1 No description available 0.02 OrthoFinder
Cre09.g407100 30780731 No description available 0.04 OrthoFinder
Cre16.g659950 30778100, PRPS5 Protein biosynthesis.organelle translation... 0.2 OrthoFinder
Cz12g28110.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.12 OrthoFinder
Dusal.0179s00014.1 33190135 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
Sro1022_g232380.1 Contig2862.g22952 Protein S5 0.05 OrthoFinder
Sro51_chlor_g029640.1 Rps5 Rps5 0.08 OrthoFinder
SymbC1.scaffold1.52 1.52 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
TPCG02620.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.08 OrthoFinder
Transcript_contig_54625 54625 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
Transcript_contig_56867 56867 Ribosomal protein S5, N-terminal [Interproscan]. 0.05 OrthoFinder
Vocar.0004s0097.1 32889445 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
Vocar.0029s0076.1 32887394 Hypothetical protein 0.02 OrthoFinder
XM_002506775.1 MICPUN_92603, 92603 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.18 OrthoFinder
XM_003057718.1 MicpuC2_32996, 32996 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
XM_003061002.1 MicpuC2_48160, 48160 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56846.1_9491 PRW56846 30S ribosomal S5 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44968.1_1935 PRW44968 30S ribosomal S5 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 82 141
IPR005324 Ribosomal_S5_C 162 229
No external refs found!