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  5. OT_13G01230.1

OT_13G01230.1


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002219 (OrthoFinder) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_13G01230.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cz14g03150.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002505320.1 MICPUN_68726, 68726 WD40 repeat [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01004768.1_cds_GFH30214.1_24691 HaLaN_29020, GFH30214 Anaphase-promoting complex subunit 4, WD40 domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33905.1_2949 PRW33905 ROOT INITIATION DEFECTIVE 3 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 115 151
IPR001680 WD40_repeat 273 306
No external refs found!