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  5. OT_13G00780.1

OT_13G00780.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0004559 (OrthoFinder) Phylogenetic Tree(s): OG0004559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_13G00780.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cre13.g566050 30784080 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
MF GO:0019211 phosphatase activator activity IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 8 70
No external refs found!