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  5. OT_12G02920.1

OT_12G02920.1


Description : Ribosomal protein L22e [Interproscan].


Gene families : OG_01_0002253 (OrthoFinder) Phylogenetic Tree(s): OG0002253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_12G02920.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001206.7 tig00001206_g7490.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder
Cre07.g357850 30774301, RPL22 Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder
Cz08g30250.t1 No alias Ribosomal protein L22e [Interproscan]. 0.15 OrthoFinder
Dusal.0067s00003.1 33194677 Ribosomal protein L22e [Interproscan]. 0.2 OrthoFinder
EOD18860 No alias Ribosomal protein L22e [Interproscan]. 0.07 OrthoFinder
PTI_20G02050.1 No alias Ribosomal protein L22e [Interproscan]. 0.3 OrthoFinder
Sro89_g046870.1 Contig3846.g29608 60S ribosomal protein L22 0.26 OrthoFinder
SymbC1.scaffold1954.5 1954.5 Ribosomal protein L22e [Interproscan]. 0.01 OrthoFinder
TP06G02320.1 No alias Ribosomal protein L22e [Interproscan]. 0.15 OrthoFinder
Transcript_contig_80087 80087 Ribosomal protein L22e [Interproscan]. 0.05 OrthoFinder
Vocar.0051s0045.1 32886996 Ribosomal protein L22e [Interproscan]. 0.13 OrthoFinder
XM_002499837.1 MICPUN_90144, 90144 Ribosomal protein L22e [Interproscan]. 0.19 OrthoFinder
XM_003055223.1 MicpuC2_31192, 31192 Ribosomal protein L22e [Interproscan]. 0.15 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39267.1_2590 PRW39267 60S ribosomal L22-2 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499191.1_8144 KAA8499191 60S ribosomal protein L22 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006839 mitochondrial transport IEP Enrichment
BP GO:0006848 pyruvate transport IEP Enrichment
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0098656 anion transmembrane transport IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901475 pyruvate transmembrane transport IEP Enrichment
BP GO:1990542 mitochondrial transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 8 117
No external refs found!