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  5. OT_12G02420.1

OT_12G02420.1


Description : Ribosomal protein L13 [Interproscan].


Gene families : OG_01_0003121 (OrthoFinder) Phylogenetic Tree(s): OG0003121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_12G02420.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.29 tig00000792_g4178.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Cre12.g532550 30791692, RPL13a Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz05g22130.t1 No alias Hypothetical protein 0.06 OrthoFinder
EOD25270 No alias Ribosomal protein L13 [Interproscan]. 0.08 OrthoFinder
EOD35558 No alias Ribosomal protein L13 [Interproscan]. 0.08 OrthoFinder
PTI_02G04390.1 No alias Ribosomal protein L13 [Interproscan]. 0.17 OrthoFinder
Sro678_g186000.1 Contig2726.g21985 60S ribosomal protein L13a (Fragment) 0.19 OrthoFinder
SymbC1.scaffold1593.4 1593.4 Hypothetical protein 0.03 OrthoFinder
TP04G09050.1 No alias Hypothetical protein 0.13 OrthoFinder
Vocar.0017s0012.1 32891353 Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
XM_002507201.1 MICPUN_93104, 93104 Ribosomal protein L13 [Interproscan]. 0.13 OrthoFinder
XM_003054776.1 MicpuC2_30605, 30605 Ribosomal protein L13 [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58824.1_7345 PRW58824 60S ribosomal L13a-4 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497918.1_6871 KAA8497918 60S ribosomal protein L13a 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 5 111
No external refs found!