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  5. OT_12G01890.1

OT_12G01890.1


Description : RNA polymerase I associated factor, A49-like [Interproscan].


Gene families : OG_01_0006220 (OrthoFinder) Phylogenetic Tree(s): OG0006220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_12G01890.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre01.g070567 30789058 RNA biosynthesis.RNA polymerase I-dependent... 0.06 OrthoFinder
Cz09g12220.t1 No alias RNA polymerase I associated factor, A49-like [Interproscan]. 0.08 OrthoFinder
Transcript_contig_54531 54531 RNA polymerase I associated factor, A49-like [Interproscan]. 0.02 OrthoFinder
XM_002508725.1 MICPUN_61946, 61946 RNA polymerase I associated factor, A49-like [Interproscan]. 0.02 OrthoFinder
XM_003056800.1 MicpuC2_38768, 38768 RNA polymerase I associated factor, A49-like [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01003778.1_cds_GFH28196.1_22673 HaLaN_26645, GFH28196 RNA polymerase I associated factor, A49-like [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60044.1_6712 PRW60044 DNA-directed RNA polymerase I subunit RPA49 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR009668 RNA_pol-assoc_fac_A49-like 109 475
No external refs found!