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  5. OT_12G01680.1

OT_12G01680.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0000999 (OrthoFinder) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_12G01680.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020614.84 tig00020614_g12199.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cz05g20220.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Cz11g16130.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Vocar.0043s0043.1 32886948 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498840.1_7793 KAA8498840 Sm-like protein LSM1A 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 13 77
No external refs found!