OT_11G01660.1


Description : DNA ligase, ATP-dependent, N-terminal; DNA ligase, ATP-dependent, C-terminal; DNA ligase, ATP-dependent, central; BRCT domain [Interproscan].


Gene families : OG_01_0001786 (OrthoFinder) Phylogenetic Tree(s): OG0001786_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_11G01660.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Sro61_g035070.1 Contig3112.g24760 DNA ligase 4 0.02 OrthoFinder
XM_003063212.1 MicpuC2_53128, 53128 DNA ligase, ATP-dependent, central; DNA ligase,... 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33324.1_3411 PRW33324 DNA ligase 4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 47 238
IPR012310 DNA_ligase_ATP-dep_cent 279 531
IPR012309 DNA_ligase_ATP-dep_C 555 672
IPR001357 BRCT_dom 734 815
No external refs found!