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  5. OT_10G03270.1

OT_10G03270.1


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_10G03270.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.8 tig00020961_g16630.t1 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder
Cre01.g033832 30788674 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.03 OrthoFinder
Cre10.g436650 30789761 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.14 OrthoFinder
Cz04g18170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Cz06g11130.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0045s00001.1 33191641 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0225s00011.1 33185188 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
PTI_13G02050.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
PTI_20G02340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.12 OrthoFinder
Sro1441_g272930.1 Contig2512.g20550 Dependent RNA helicase 0.02 OrthoFinder
Sro730_g194000.1 Contig80.g832 Dependent RNA helicase 0.01 OrthoFinder
TP04G05770.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.09 OrthoFinder
TP12G00750.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Transcript_contig_55225 55225 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0986.1 32885925 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
Vocar.0001s1340.1 32885040 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002503395.1 MICPUN_59763, 59763 Helicase, C-terminal; K Homology domain, type 1;... 0.17 OrthoFinder
XM_003056811.1 MicpuC2_56357, 56357 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18294.1_5877 PRW18294 DEAD-box ATP-dependent RNA helicase 50 0.13 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05784.1_6102 PRW05784 DEAD-box ATP-dependent RNA helicase 39 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491354.1_2355 KAA8491354 DEAD-box ATP-dependent RNA helicase 39 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 509 624
IPR011545 DEAD/DEAH_box_helicase_dom 281 460
No external refs found!