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  5. OT_10G01050.1

OT_10G01050.1


Description : Brevis radix (BRX) domain; Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_10G01050.1
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Dusal.0071s00015.1 33185715 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
EOD12960 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
EOD32345 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
PTI_17G02630.1 No alias Regulator of chromosome condensation, RCC1; BTB/POZ... 0.02 OrthoFinder
PTI_30G01200.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.02 OrthoFinder
Transcript_contig_54555 54555 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58480 58480 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1245.1 32885949 Ankyrin repeat-containing domain; Regulator of... 0.03 OrthoFinder
XM_002506241.1 MICPUN_64303, 64303 Regulator of chromosome condensation, RCC1; Ankyrin... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 881 928
IPR000408 Reg_chr_condens 460 512
IPR000408 Reg_chr_condens 264 310
IPR000408 Reg_chr_condens 564 613
IPR000408 Reg_chr_condens 385 435
No external refs found!