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  5. OT_10G00080.1

OT_10G00080.1


Description : ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: OT_10G00080.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Dusal.0215s00004.1 33185763 ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.02 OrthoFinder
Dusal.0380s00007.1 33193499 DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0944.1 32886100 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61094.1_711 PRW61094 Superkiller viralicidic activity 2-like 2 isoform B 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61095.1_712 PRW61095 Superkiller viralicidic activity 2-like 2 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 934 1092
IPR011545 DEAD/DEAH_box_helicase_dom 90 241
No external refs found!